YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MAM3_ARATH
Organism: Arabidopsis thaliana
Length: 503 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAM3_ARATH.

Description E-value Query
Range
Subject
Range
gi|38567514, gi|... - gi|38567516|emb|CAD31209.1| methylthioalkylmalate synthase-like protein [Arabidopsis thaliana], gi|3...
535.0 [0..1] [503..1]

Back

Predicted Domain #1
Region A:
Residues: [1-503]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLLTSSS MITTSCRSMV LRSGLPIGSS FPSLRLTRPY DKATLFVSCC SAESKKVATS  60
   61 ATDLKPIMER RPEYIPNKLP HKNYVRVLDT TLRDGEQSPG AALTPPQKLE IARQLAKLRV 120
  121 DIMEVGFPVS SEEEFEAIKT IAKTVGNEVD EETGYVPVIC GIARCKKRDI EATWEALKYA 180
  181 KRPRVMLFTS TSEIHMKYKL KKTKEEVIEM AVNSVKYAKS LGFKDIQFGC EDGGRTEKDF 240
  241 ICKILGESIK AGATTVGFAD TVGINMPQEF GELVAYVIEN TPGADDIVFA IHCHNDLGVA 300
  301 TANTISGICA GARQVEVTIN GIGERSGNAP LEEVVMALKC RGESLMDGVY TKIDSRQIMA 360
  361 TSKMVQEHTG MYVQPHKPIV GDNCFVHESG IHQDGILKNR STYEILSPED VGIVKSENSG 420
  421 IVLGKLSGRH AVKDRLKELG YEISDEKFND IFSRYRELTK DKKRITDADL KALVVNGAEI 480
  481 SSEKLNSKGI NDLMSSPQIS AVV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.0
Match: 1sr9A
Description: Crystal Structure of LeuA from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.67031204377352 bayes_pls_golite062009
2-isopropylmalate synthase activity 2.51149699447745 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 2.36606715825952 bayes_pls_golite062009
porphobilinogen synthase activity 1.24455949903754 bayes_pls_golite062009
binding 1.1388634428163 bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 0.891977953086329 bayes_pls_golite062009
lyase activity 0.740424046054758 bayes_pls_golite062009
transferase activity 0.464721888799972 bayes_pls_golite062009
carbon-carbon lyase activity 0.36754360512349 bayes_pls_golite062009
transaldolase activity 0.184100272651834 bayes_pls_golite062009
fructose-bisphosphate aldolase activity 0.0818126250353252 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle