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View Structure Prediction Details

Protein: CDPK9_ARATH
Organism: Arabidopsis thaliana
Length: 541 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDPK9_ARATH.

Description E-value Query
Range
Subject
Range
CDPKH_ARATH - Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1
443.0 [0..1] [533..1]

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Predicted Domain #1
Region A:
Residues: [1-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCFAKNHG LMKPQQNGNT TRSVEVGVTN QDPPSYTPQA RTTQQPEKPG SVNSQPPPWR  60
   61 AAAAAPGLSP KTTTKSNSIL ENAFEDVKLF YTLGKELGRG QFGVTYLCTE NSTGKKYACK 120
  121 SISKKKLVTK ADKDDMRREI QIMQHLSGQP NIVEFKGAYE DEKAVNLVME LCAGGELFDR 180
  181 IIAKGHYTER AAASVCRQIV NVVKICHFMG VLHRDLKPEN FLLSSKDEKA LIKATDFGLS 240
  241 VFIEEGKVYR DIVGSAYYVA PEVLRRRYGK EVDIWSAGII LYILLSGVPP FWAETEKGIF 300
  301 DAILEGHIDF ESQPWPSISS SAKDLVRRML TADPKRRISA ADVLQHPWLR EGGEASDKPI 360
  361 DSAVLSRMKQ FRAM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.69897
Match: 2bdwA
Description: Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [375-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKLKKLALKV IAENIDTEEI QGLKAMFANI DTDNSGTITY EELKEGLAKL GSKLTEAEVK  60
   61 QLMDAADVDG NGSIDYIEFI TATMHRHRLE SNENLYKAFQ HFDKDSSGYI TIDELESALK 120
  121 EYGMGDDATI KEVLSDVDSD NDGRINYEEF CAMMRSGNPQ QQQPRLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.0
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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