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View Structure Prediction Details

Protein: CRC_ARATH
Organism: Arabidopsis thaliana
Length: 181 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRC_ARATH.

Description E-value Query
Range
Subject
Range
gi|71068380 - gi|71068380|gb|AAZ23116.1| transcription factor CRC [Brassica juncea]
223.0 [0..1] [181..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLEEKPTMT ASRASPQAEH LYYVRCSICN TILAVGIPLK RMLDTVTVKC GHCGNLSFLT  60
   61 TTPPLQGHVS LTLQMQSFGG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDYKKGSSSS SSSSTSSDQP PSPSPPFVVK PPEKKQRLPS AYNRFMRDEI QRIKSANPEI  60
   61 PHREAFSAAA KNWAKYIPNS PTSITSGGHN MIHGLGFGEK K

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.63
Match: 1wxlA
Description: Solution Structure of the HMG-box domain in the SSRP1 subunit of FACT
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle