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View Structure Prediction Details

Protein: gi|9294077, gi|1...
Organism: Arabidopsis thaliana
Length: 394 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9294077, gi|1....

Description E-value Query
Range
Subject
Range
gi|110740324 - gi|110740324|dbj|BAF02057.1| hypothetical protein [Arabidopsis thaliana]
381.0 [0..17] [394..3]
gi|56201807, gi|... - gi|56201807|dbj|BAD73257.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Oryza sativa Japonica...
376.0 [0..24] [388..16]
PLOD1_CHICK - Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Gallus gallus GN=PLOD1 PE=1 SV=1
314.0 [0..50] [345..425]
PLOD2 - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
313.0 [0..50] [345..432]
gi|73990680 - gi|73990680|ref|XP_542822.2| PREDICTED: similar to procollagen-lysine, 2-oxoglutarate 5-dioxygenase ...
313.0 [0..50] [345..440]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEQREGSQ ETTTTTVEGN GTIAGQNSHS AAPTTLRATS TMVSCQRLRL NPNNEHRPDS  60
   61 YEDLQLDFPN SVYSSLEKYL PPNMLVSNRD EKIKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIMLRHLP HGERSRAQRH SDYRLKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [123-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTNYQPLHKE LYTLVPTVCF VPAFLKAINE NTEESFRNII SEPSPGVFVF DMLQPSFCEM  60
   61 MLAEIDNFER WVGETKFRIM RPNTMNKYGA VLDDFGLDTM LDKLMEGFIR PISKVFFSDV 120
  121 GGATLDSHHG FVVEYGKDRD VDLGFHVDDS EVTLNVCLGN QFVGGELFFR GTRCEKHVNT 180
  181 ATKADETYDY CHIPGQAVLH RGRHRHGARA TTCGHRVNML LWCRSSVFRE LKTHHKDFSS 240
  241 WCGECFCEKR DEKVRSIDAL RKKLFKPRQT QA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.82
Match: 2hbtA
Description: No description for 2hbtA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle