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View Structure Prediction Details

Protein: gi|10177962, gi|...
Organism: Arabidopsis thaliana
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10177962, gi|....

Description E-value Query
Range
Subject
Range
gi|18700095 - gi|18700095|gb|AAL77659.1| AT3g27230/K17E12_5 [Arabidopsis thaliana]
323.0 [0..1] [413..1]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVSLKIGD GTARFKRSTL FSSAINLLML FSIVTTNLFA LYAFSSRSQS HTPHPLHSNN  60
   61 VSLVSQHLSL ILREIDSSHH TLTQMEKQII GYESLDLSQQ EVPQELKLFL QQHQLPLGKD 120
  121 SRTGITQMV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [130-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASVGHSCEMS LDLLSQYMSY NVFEKCPDDW SLAQKLILRA CEPLPRRRCL AKTVHKPGLA  60
   61 LFPDSLWRPV GNSSVNWSGL GCKSFECLKG KKLSRDCVGC FDLATSHEKD RFVKVNGKTD 120
  121 FLIDDVLDLG DGKIRIGFDI SSGSGTFAAR MAEKNVNIIS NTLNIDAPFS EFIAARGIFP 180
  181 LFMSLDQRLP FYDNVFDLIH ASNGLDLAVS NKPEKLEFLM FDLDRILKPG GLFWLDNFYC 240
  241 GNDEKKRVLT RLIERFGYKK LKWVVGEKTD AEVFLSAVLQ KPARI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 1sqfA
Description: The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle