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View Structure Prediction Details

Protein: gi|3033377, gi|7...
Organism: Arabidopsis thaliana
Length: 540 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3033377, gi|7....

Description E-value Query
Range
Subject
Range
gi|92889836 - gi|92889836|gb|ABE90048.1| Berberine and berberine like, putative [Medicago truncatula]
339.0 [0..28] [539..23]

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Predicted Domain #1
Region A:
Residues: [1-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFWSRPLTF LIIIIYLIIQ QVNSSPPSLS IPEHFLRCLD TQPSDHGSPN SRTAVIPTNS  60
   61 SFSTNLMNGV RNLRFASVST RKPEVIVAAV TETHIRATIS CCKLLNLELR IRSGGHDYEG 120
  121 FSYTSPVPFV ILDMYNFNKI DINMKDETVW IQSGASLGQL YYNIASKSKV HAFPAGVCPK 180
  181 VGAGGHFSGG GFGNLMRKYG LSIDHIIDAQ IMDANGKVYR NRQAMGEDVF WAIRGGGGGS 240
  241 YGVILAWKIK LVRVPEKVTV FKLERTVREG AVDLVHKWQQ VAPVIDRDLF IRLEIKPINR 300
  301 KISKGKTIKV SFIGMFLGLP ERLLNITKQS FPELHLTKED CMVKKWIESS VFWANYPEKA 360
  361 PIELLLKRVS TNEYYWKRTS DFVQAPISKQ GLAKIFQTMI DHSPLPRRVW MQWNPWGGKM 420
  421 AEIASDATAF VHRGGNVFMI EHFMNWYRPG DELEEKFLAI ARSFKEAMAP FVSKNPREAF 480
  481 FNYRDVDIGI TTPGYNATYE GAKVYGDSYF KGNYLRLVKI KARFDRTNFF RSQQGIPVLA 540
  541 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.69897
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle