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View Structure Prediction Details

Protein: NFYA3_ARATH
Organism: Arabidopsis thaliana
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFYA3_ARATH.

Description E-value Query
Range
Subject
Range
gi|2398525 - gi|2398525|emb|CAA74050.1| Transcription factor [Arabidopsis thaliana]
479.0 [0..1] [340..1]
gi|92873024, gi|... - gi|92892977|gb|ABE91491.1| CCAAT-binding transcription factor, subunit B [Medicago truncatula], gi|9...
273.0 [0..4] [340..2]
gi|108708770, gi... - gi|57222442|gb|AAW39026.1| putative CCAAT-binding transcription factor [Oryza sativa (japonica culti...
222.0 [0..65] [304..40]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ  60
   61 ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG SEITQRKGFA SNPKQGSMTG 120
  121 FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [153-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAPTCNPQMV SMIPGRVPLP AELTETDPVF VNAKQYHAIM RRRQQRAKLE AQNKLIRARK  60
   61 PYLHESRHVH ALKRPRGSGG RFLNTKKLLQ ESEQAAAREQ EQDKLG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 37.552842
Match: PF02045.6
Description: No description for PF02045.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [259-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQVNRKTNMS RFEAHMLQNN KDRSSTTSGS DITSVSDGAD IFGHTEFQFS GFPTPINRAM  60
   61 LVHGQSNDMH GGGDMHHFSV HI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle