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View Structure Prediction Details

Protein: NGA1_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NGA1_ARATH.

Description E-value Query
Range
Subject
Range
gi|62319903 - gi|62319903|dbj|BAD93968.1| ARF1-binding protein [Arabidopsis thaliana]
361.0 [0..1] [307..130]

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Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTDLSLTRD EDEEEAKPLA EEEGAREVAD REHMFDKVVT PSDVGKLNRL VIPKQHAERF  60
   61 FPLDSSSNEK GLLLNFEDLT GKSWRFRYSY WNSSQSYVMT KGWSRFVKDK KLDAGDIVSF 120
  121 QRCVGDSGRD SRLFIDWRRR PKVPDHPHFA AGAMFPRFYS FPSTNYS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.39794
Match: 1widA
Description: Solution Structure of the B3 DNA-Binding Domain of RAV1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [168-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYNHQQQRHH HSGGGYNYHQ IPREFGYGYF VRSVDQRNNP AAAVADPLVI ESVPVMMHGR  60
   61 ANQELVGTAG KRLRLFGVDM ECGESGMTNS TEEESSSSGG SLPRGGGGGA SSSSFFQLRL 120
  121 GSSSEDDHFT KKGKSSLSFD LDQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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