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View Structure Prediction Details

Protein: VCL22_ARATH
Organism: Arabidopsis thaliana
Length: 511 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VCL22_ARATH.

Description E-value Query
Range
Subject
Range
GLU2_ORYSA, GLUA... - Glutelin type-A 2 precursor (Glutelin type II) [Contains: Glutelin type-A 2 acidic chain; Glutelin t...
GLUA2_ORYSJ - Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1
360.0 [0..55] [503..29]

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Predicted Domain #1
Region A:
Residues: [1-511]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKNKRAIGF LLLVVLINGV MMTRSNGYEG EEEWGGAGGG EWGGAEGGGA WGGGGGGGGA  60
   61 WGGEGEGGGE WGGGGEGGGG GRRGWFMMRE SRQVIKSEGG EMRVVLSPRG RIIEKPMHIG 120
  121 FLTMEPKTLF VPQYLDSSLL IFIRQGEATL GVICKDEFGE RKLKAGDIYW IPAGSVFYLH 180
  181 NTGLGQRLHV ICSIDPTQSL GFETFQPFYI GGGPSSVLAG FDPHTLTSAF NVSLPELQQM 240
  241 MMSQFRGPIV YVTEGPQPQP QSTVWTQFLG LRGEEKHKQL KKLLETKQGS PQDQQYSSGW 300
  301 SWRNIVRSIL DLTEEKNKGS GSSECEDSYN IYDKKDKPSF DNKYGWSIAL DYDDYKPLKH 360
  361 SGIGVYLVNL TAGAMMAPHM NPTATEYGIV LAGSGEIQVV FPNGTSAMNT RVSVGDVFWI 420
  421 PRYFAFCQIA SRTGPFEFVG FTTSAHKNRP QFLVGSNSLL RTLNLTSLSI AFGVDEETMR 480
  481 RFIEAQREAV ILPTPAAAPP HVGEMVSDRF V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.522879
Match: 1fxzA
Description: Seed storage 7S protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle