YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6911859, gi\|1...
Organism:	Arabidopsis thaliana
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6911859, gi|1....

Description	E-value	Query Range	Subject Range
gi\|15239410, gi\|... - gi\|9759332\|dbj\|BAB09841.1\| unnamed protein product [Arabidopsis thaliana], gi\|20259627\|gb\|AAM14170.1...	163.0	[0..4]	[148..2]
gi\|92872265 - gi\|92872265\|gb\|ABE80969.1\| Protein of unknown function DUF584 [Medicago truncatula]	141.0	[0..2]	[148..3]
gi\|50926536, gi\|... - gi\|50926536\|ref\|XP_473215.1\| OSJNBa0019D11.12 [Oryza sativa (japonica cultivar-group)], gi\|21741857\|... gi\|116310726 - gi\|116310726\|emb\|CAH67522.1\| OSIGBa0131L05.3 [Oryza sativa (indica cultivar-group)]	136.0	[0..5]	[148..4]

Back

Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATRKSYY QRPSHRFLPT DRTYNVTGDS EFEFDESDLY SNRSDSPEFR RKLITSNRKS  60
   61 SPATVTTTTV ASSLPMNVQN WSKILGKENR KSIENDDDGG EGKLPPHEYL AKTRMASFSV 120
  121 HEGIGRTLKG RDMSRVRNAI LEKTGFLD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.107905
Match:	PF04520.4
Description:	No description for PF04520.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits