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View Structure Prediction Details

Protein: gi|10176895, gi|...
Organism: Arabidopsis thaliana
Length: 537 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10176895, gi|....

Description E-value Query
Range
Subject
Range
gi|23198322, gi|... - gi|23198322|gb|AAN15688.1| berberine bridge enzyme-like protein [Arabidopsis thaliana], gi|16648925|...
366.0 [0..1] [536..1]

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Predicted Domain #1
Region A:
Residues: [1-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISKPLPLF SILVLYFSLY TITPTSSLAS LQDQFINCVQ RNTHVYFPLE KTFFAPTKNV  60
   61 SMFSQVLEST AQNLRFLKKS MPKPGFIFSP IHESHVQASI ICSKKLRMHL RVRSGGHDYE 120
  121 GLSYVSQIDK PFILMDLSKM RQVNINIQDN SAWVQSGATV GELYYRIAEK SKVHGFPAGL 180
  181 CSSLGIGGHI TGGAYGSMMR KYGLGADNVL DAKIVDANGK LLDRAAMGED TFWAIRGGAG 240
  241 GSFGIILAWK IKLVPVPKTV TVFTVTKTLQ QDVGNKIISK WQRVADKLVE ELFIRVLFNV 300
  301 AGTGGNKTVT TSYNALFLGG KGTLMNVMKK SFPELGLTFK DCIEMSWLES IAYISGFPTH 360
  361 TPTNVLLQGK SPFPKVSFKA KSDFVKTPIP ESGLQGIFKK LLKEDIPLMI WNPYGGMMAK 420
  421 IPESQIPFPH RKGVLFKVQY VTSWLDSDKR PSRHINWIRD LYSYMTPYVS SNPREAYVNY 480
  481 RDLDLGRNTK DVKTCIKQAQ VWGANYFKNN FNRLMMIKAK VDPENFFRHE QSIPPMM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.39794
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle