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View Structure Prediction Details

Protein: gi|11358271, gi|...
Organism: Arabidopsis thaliana
Length: 553 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358271, gi|....

Description E-value Query
Range
Subject
Range
gi|50509308, gi|... - gi|50934027|ref|XP_476541.1| putative OsLRK1(receptor-type protein kinase) [Oryza sativa (japonica c...
325.0 [0..2] [537..398]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDQRWRLL RPAFFIFFFL FFLPHNLTFG LCFNTEALAL MKFKERIEID PFGALVNWGE  60
   61 LSHCSWSGVV CSHDGRVVIL NLRDLSLQGT LAPELGNLTH LKSLILRNNS FSGKVPEEVT 120
  121 ELQELEILDL CDNNFGQPFP FARRLLQISP PPSQPSPPSP MEEVPIDFPF FFAPPPQNIG 180
  181 ASPPTETQVI PNPSPVPPPP AQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.522879
Match: 2id5A
Description: No description for 2id5A was found.

Predicted Domain #2
Region A:
Residues: [204-553]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPAQTPPPQL SEVPHAVNKK KSHKSKMYII VGVLVGVLGV MAALVAFFFL WNQKVKLIKP  60
   61 WGETGSSGQL QDVVTTGVPK LKLAELETAC EDFSNIIGST SSDATIYKGT LSTGSEIAVL 120
  121 AVASGSLQDW SEDHETQFQE KRLSQVNHKN FLNVIGYCHE DEPFNRMLVF EYAPNGSLFE 180
  181 HLHDQDAEHL DWPMRLRIVM GIAYCMEHMH NLNPKPISHT NLNSSSVYLA TDYAAKVSDF 240
  241 TFLSSTPLDP MTNVSSFGAL LQEIITGKIP DPDSLLQEET KPVADPTLKS FQEEVMERVW 300
  301 EVVKECLSQK VEMKEVVVKL REITGITPEA ALPSRSPAWW AELEIISTEM 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.522879
Match: 1ad5A
Description: Hemapoetic cell kinase Hck; Hemopoetic cell kinase Hck; Haemopoetic cell kinase Hck
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.686492203566958 bayes_pls_golite062009
transferase activity 0.66841261245817 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.66326000691279 bayes_pls_golite062009
kinase activity 0.65753777854807 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.64444215862273 bayes_pls_golite062009
protein kinase activity 0.56587465829201 bayes_pls_golite062009
binding 0.0554152720226 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle