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View Structure Prediction Details

Protein: gi|15222668, gi|...
Organism: Arabidopsis thaliana
Length: 443 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15222668, gi|....

Description E-value Query
Range
Subject
Range
FP1_MYTGA - Adhesive plaque matrix protein OS=Mytilus galloprovincialis GN=FP1 PE=2 SV=1
220.0 [0..2] [442..249]

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Predicted Domain #1
Region A:
Residues: [1-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPNWPSLL MVVLALYSMV AYTSAQYSPT PTPYSPLPPY VYNSPPPYVY NSPSPPPYVY  60
   61 KPPPYIYSSP PPPPYVYSSP PPPPYVYNSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP 120
  121 PPPPYVYKSP PPPPYVYSSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSPP PPPPYVYQSP 180
  181 PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP PPPPYVYSSP PPPPYVYKSP 240
  241 PPPPYVYSSP PPPPY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [256-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYKSPPPPPY VYSSPPPPPY VYKSPPPPPY VYSSPPPPPY VYSSPPPPPY VYSSPPPPPY  60
   61 VYKSPPPPPY VYTSPPPPPY VYKSPPPPPY VDSYSPPPAP YVYKPPPYVY KPPPYVYNYS 120
  121 PPPAPYVYKP PPYVYSYSPP PAPYVYKPPP YVYSYSPPPA PYVYKPPPYV YSSPSPPPYY 180
  181 SSPSPPLY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle