YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45592906, gi\|...
Organism:	Arabidopsis thaliana
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45592906, gi|....

Description	E-value	Query Range	Subject Range
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	129.0	[0..5]	[129..1418]
gi\|297829, gi\|482661 - pir\|\|A60988 saliva-interacting protein precursor - Streptococcus mutans (serotype f, strain OMZ175)...	126.0	[0..7]	[133..841]
SPAP_STRMU - Cell surface antigen I/II OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=spaP PE... SPAP_STRMU - Cell surface antigen I/II OS=Streptococcus mutans GN=spaP PE=1 SV=2	120.0	[0..7]	[133..837]
gi\|25990270 - gi\|25990270\|gb\|AAC44101.3\| streptococcal surface protein A precursor [Streptococcus gordonii]	118.0	[0..8]	[134..835]
gi\|73955457 - gi\|73955457\|ref\|XP_858173.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	117.0	[0..8]	[130..1722]
gi\|76635636 - gi\|76635636\|ref\|XP_881215.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	116.0	[0..8]	[130..1693]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMNNTKEYS IRTPSLGNLP PGTTGTCCPP PLVFPLLPLS PPPSPPPSPS SPPRLPPPFP  60
   61 ALFPPEPPLP PRFELPPPLF PPPPLPRLPP PLLPPPEEPP REPPPPPPPP EEPPPPASCL 120
  121 RTKSPENGIV STVK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.61
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits