| Protein: | PUB16_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 674 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB16_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
240.0 | [0..288] | [674..50] |
|
Region A: Residues: [1-341] |
1 11 21 31 41 51
| | | | | |
1 MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS 60
61 LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM QRIKSLIDDC SRVSKLWLLL 120
121 QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR 180
181 RKVTDTIAGI KHQISPDHST LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA 240
241 SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD 300
301 RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW C
|
| Detection Method: |  |
| Confidence: | 25.69897 |
| Match: | 2c2lA |
| Description: | Crystal structure of the CHIP U-box E3 ubiquitin ligase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.02652482814057 | bayes_pls_golite062009 |
|
Region A: Residues: [342-674] |
1 11 21 31 41 51
| | | | | |
1 RDQKIPFELY GDGGGEPAPC KEAVEFTKMM VSFLIEKLSV ADSNGVVFEL RALAKSDTVA 60
61 RACIAEAGAI PKLVRYLATE CPSLQINAVT TILNLSILEQ NKTRIMETDG ALNGVIEVLR 120
121 SGATWEAKAN AAATLFSLAG VSAYRRRLGR KARVVSGLVD LAKQGPTSSK RDALVAILNL 180
181 VAERENVGRF VEAGVMGAAG DAFQELPEEA VAVVEAVVRR GGLMAVSAAF SLIRLLGEVM 240
241 REGADTTRES AAATLVTMCR KGGSELVAEM AAIPGIERVI WEMIGAGTAR GGRKAASLMR 300
301 YLRRWAAGDT HNTAAETQSI VVPTPSRIFS PVL
|
| Detection Method: | |
| Confidence: | 58.0 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
