YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7485359, gi\|2...
Organism:	Arabidopsis thaliana
Length:	364 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7485359, gi|2....

Description	E-value	Query Range	Subject Range
gi\|145351239, gi... - gi\|26450559\|dbj\|BAC42392.1\| unknown protein [Arabidopsis thaliana], gi\|145351239\|ref\|NP_194954.2\| un...	221.0	[0..191]	[364..1]
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	134.0	[0..3]	[216..423]
gi\|42544808, gi\|... - gi\|46108454\|ref\|XP_381285.1\| hypothetical protein FG01109.1 [Gibberella zeae PH-1], gi\|42544808\|gb\|E...	133.0	[0..2]	[252..402]
gi\|76621180 - gi\|76621180\|ref\|XP_613288.2\| PREDICTED: similar to solute carrier family 35, member E1 [Bos taurus]	126.0	[0..3]	[230..146]
gi\|109503911 - gi\|109503911\|ref\|XP_001067921.1\| PREDICTED: similar to solute carrier family 35, member E1 [Rattus n...	124.0	[0..3]	[215..115]
gi\|73986253 - gi\|73986253\|ref\|XP_541964.2\| PREDICTED: similar to solute carrier family 35, member E1 [Canis famili...	124.0	[0..3]	[216..144]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	123.0	[0..3]	[220..122]
gi\|50728312 - gi\|50728312\|ref\|XP_416083.1\| PREDICTED: similar to SLC35E3 protein [Gallus gallus]	123.0	[0..3]	[197..231]
ENSMMUG000000129... - null, null gi\|114675843 - gi\|114675843\|ref\|XP_512469.2\| PREDICTED: hypothetical protein [Pan troglodytes] SLC35E1 - solute carrier family 35, member E1	122.0	[0..4]	[216..1]
gi\|91090644 - gi\|91090644\|ref\|XP_973866.1\| PREDICTED: similar to conserved hypothetical protein [Tribolium castane...	121.0	[0..3]	[239..112]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNNPVLPVS DPPLAGENDS DGKGVDDRLF KGSAMTKRGA YAALSYMACA GNFLDFTCII  60
   61 DSNHVFWSRV QFWKIISFTA ADSFSIDSAS TFVPVKTLFH TLPLAIAYLL YMVVLLCSCV 120
  121 LAFVLNYCIF LNTTLNSALT QTICGNMKDL FTVGLGWMLF GGLPFDLMNV IGQLFGFFGP 180
  181 GKSNFLNNQS MDVPPRRSLA ASLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [205-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRLIDGLPR RRSFNYNQMP EEPIKLTVLK LDGSSFGIQV LKTATVGELK MAVEAAFSHL  60
   61 PISGPGKISW FSTTPETRKK NVIREVEEDG VVDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.890	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)

Predicted Domain #3

Region A:
Residues: [299-364]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPRSQPSFLA TVLGGLLSYK STPSQRGTKY RNVTASRVFN KLIARFRFKC NSEKDVWNRK  60
   61 KLISET

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits