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View Structure Prediction Details

Protein: gi|4972066, gi|7...
Organism: Arabidopsis thaliana
Length: 314 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4972066, gi|7....

Description E-value Query
Range
Subject
Range
NAC72_ARATH - NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1
347.0 [0..1] [314..1]
gi|31322582 - gi|31322582|gb|AAP35056.1| NAC-domain protein 485 [Brassica napus]
320.0 [0..1] [314..1]
gi|62546189, gi|... - gi|66394516|gb|AAY46124.1| NAC domain protein NAC4 [Glycine max], gi|62546189|gb|AAX85981.1| NAC4 pr...
271.0 [0..1] [274..1]
gi|6175246 - gi|6175246|gb|AAF04915.1|AF011555_1 jasmonic acid 2 [Lycopersicon esculentum]
266.0 [0..1] [299..1]
gi|51871853 - gi|51871853|gb|AAU12055.1| jasmonic acid 2 [Solanum tuberosum]
261.0 [0..1] [263..1]

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Predicted Domain #1
Region A:
Residues: [1-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP  60
   61 SKQTCFTFVG EYNCNYLGKA LFGEKEWYFF SPRDRKYPNG SRPNRVAGSG YWKATGTDKI 120
  121 ITADGRRVGI KKALVFYAGK APKGTKTNWI MHEYRLIEHS RSHGSSKLDD WVLCRIYKKT 180
  181 SGSQRQAVTP VQACREEHST NGSSSSSSSQ LDDVLDSFPE IKDQSFNLPR MNSLRTILNG 240
  241 N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [242-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDWASLAGLN PIPELAPTNG LPSYGGYDAF RAAEGEAESG HVNRQQNSSG LTQSFGYSSS  60
   61 GFGVSGQTFE FRQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle