YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7270114, gi\|1...
Organism:	Arabidopsis thaliana
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7270114, gi|1....

Description	E-value	Query Range	Subject Range
gi\|7270115, gi\|2... - pir\|\|T04634 hypothetical protein F10N7.80 - Arabidopsis thaliana (fragment), gi\|7270115\|emb\|CAB799...	158.0	[0..23]	[122..161]
gi\|4406382 - gi\|4406382\|gb\|AAD19962.1\| LGC1 [Lilium longiflorum]	141.0	[0..25]	[123..24]
gi\|25272006 - gi\|25272006\|gb\|AAN74746.1\| hypothetical protein [Marchantia polymorpha]	135.0	[0..25]	[123..92]
gi\|32395581 - gi\|32395581\|gb\|AAP37972.1\| seed specific protein Bn15D33A [Brassica napus]	128.0	[0..28]	[120..26]
gi\|125531411 - gi\|125531411\|gb\|EAY77976.1\| hypothetical protein OsI_031935 [Oryza sativa (indica cultivar-group)] gi\|125574331, gi... - gi\|78708063\|gb\|ABB47038.1\| hypothetical protein LOC_Os10g14020 [Oryza sativa (japonica cultivar-grou...	124.0	[0..26]	[122..69]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNGEKNIK LGRKEETGRR PWYGDDSYSL ESLSVIQSKT GNMVENKPEW EVKVLNSSPC  60
   61 YFTHTTLSCV RFKSVTPIDS KVLSKSGDTC LLGNGDSIHD ISFKYVWDTS FDLKVVDGYI 120
  121 ACS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits