YRC Public Data Repository - Protein Structure Prediction

Protein:	GATL2_ARATH
Organism:	Arabidopsis thaliana
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATL2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|215713560, gi... - gi\|52077295\|dbj\|BAD46337.1\| glycosyltransferase family-like [Oryza sativa Japonica Group], gi\|507258...	243.0	[0..2]	[340..348]
GATL9_ARATH - Probable galacturonosyltransferase-like 9 OS=Arabidopsis thaliana GN=GATL9 PE=2 SV=1	241.0	[0..9]	[341..35]
gi\|86439693 - gi\|86439693\|emb\|CAJ19325.1\| glycosyl transferase-like protein [Triticum aestivum]	241.0	[0..2]	[340..338]
gi\|86438644 - gi\|86438644\|emb\|CAJ26362.1\| glycosyl transferase-like protein [Brachypodium sylvaticum]	234.0	[0..2]	[340..333]
gi\|90657589 - gi\|90657589\|gb\|ABD96888.1\| hypothetical protein [Cleome spinosa]	228.0	[0..12]	[341..33]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSKFILYLS ILAVFTVSFA GGERFKEAPK FFNSPECLTI ENDEDFVCSD KAIHVAMTLD  60
   61 TAYLRGSMAV ILSVLQHSSC PQNIVFHFVT SKQSHRLQNY VVASFPYLKF RIYPYDVAAI 120
  121 SGLISTSIRS ALDSPLNYAR NYLADILPTC LSRVVYLDSD LILVDDISKL FSTHIPTDVV 180
  181 LAAPEYCNAN FTTYFTPTFW SNPSLSITLS LNRRATPCYF NTGVMVIELK KWREGDYTRK 240
  241 IIEWMELQKR IRIYELGSLP PFLLVFAGNI APVDHRWNQH GLGGDNFRGL CRDLHPGPVS 300
  301 LLHWSGKGKP WVRLDDGRPC PLDALWVPYD LLESRFDLIE S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1ss9A
Description:	Crystal Structural Analysis of Active Site Mutant Q189E of LgtC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits