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View Structure Prediction Details

Protein: OPT5_ARATH
Organism: Arabidopsis thaliana
Length: 753 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OPT5_ARATH.

Description E-value Query
Range
Subject
Range
OPT1_ARATH - Oligopeptide transporter 1 OS=Arabidopsis thaliana GN=OPT1 PE=2 SV=1
753.0 [0..1] [753..1]

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Predicted Domain #1
Region A:
Residues: [1-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSLEVSKP PEHKVESKIV IADEEEEDEN DSPIEEVRLT VPITDDPSLP VLTFRTWFLG  60
   61 MVSCVVLAFV NNFFGYRSNP LTVSSVVAQI ITLPLGKLMA TTLPTTKLRL PGTNWSCSLN 120
  121 PGPFNMKEHV LITIFANTGA GGAYATSILT IVKAFYHRNL NPAAAMLLVQ TTQLLGYGWA 180
  181 GMFRKYLVDS PYMWWPANLV QVSLFRALHE KEEKREGKQT KLRFFLIVFF LSFTYYIVPG 240
  241 YLFPSISYLS FVCWIWTRSV TAQQIGSGLH GLGI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [275-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSFGLDWSTV AGFLGSPLAV PFFAIANSFG GFIIFFYIIL PIFYWSNAYE AKKFPFYTSH  60
   61 PFDHTGQRYN TTRILNQKTF NIDLPAYESY SKLYLSILFA LIYGLSFGTL TATISHVALF 120
  121 DGKFIWELWK KATLTTKDKF GDVHTRLMKK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [425-568]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYKEVPQWWF VAVLAASFVL ALYACEGFGK QLQLPWWGLL LACAIAFTFT LPIGVILATT  60
   61 NQRMGLNVIS ELIIGFLYPG KPLANVAFKT YGSVSIAQAL YFVGDFKLGH YMKIPPRSMF 120
  121 IVQLVATIVA STVSFGTTWW LLSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [569-753]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VENICNTDML PKSSPWTCPG DVVFYNASII WGIIGPGRMF TSKGIYPGMN WFFLIGFLAP  60
   61 VPVWFFARKF PEKKWIHQIH IPLIFSGANV MPMAKAVHYW SWFAVGIVFN YYIFRRYKGW 120
  121 WARHNYILSA ALDAGTAVMG VLIYFALQNN NISLPDWWGN ENTDHCPLAN CPTEKGIVAK 180
  181 GCPVF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle