YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4006887, gi\|4...
Organism:	Arabidopsis thaliana
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4006887, gi|4....

Description	E-value	Query Range	Subject Range
gi\|240256209, gi... - gi\|240256209\|ref\|NP_568009.5\| unknown protein [Arabidopsis thaliana], gi\|15028159\|gb\|AAK76703.1\| unk...	283.0	[0..1]	[374..1]
gi\|92871740, gi\|... - gi\|92871740\|gb\|ABE80668.1\| Cystinosin/ERS1p repeat [Medicago truncatula], gi\|92868494\|gb\|ABE78499.1\|...	231.0	[0..2]	[359..1]
gi\|29150087, gi\|... - gi\|32422287\|ref\|XP_331587.1\| hypothetical protein [Neurospora crassa], gi\|29150087\|emb\|CAD79648.1\| c... gi\|85091923 - gi\|85091923\|ref\|XP_959139.1\| hypothetical protein NCU09195 [Neurospora crassa OR74A]	217.0	[0..25]	[356..6]
gi\|45199123, gi\|... - gi\|45199123\|ref\|NP_986152.1\| AFR605Cp [Ashbya gossypii ATCC 10895], gi\|44985263\|gb\|AAS53976.1\| AFR60... gi\|44985263 - gi\|44985263\|gb\|AAS53976.1\| AFR605Cp [Ashbya gossypii ATCC 10895]	206.0	[0..31]	[357..9]
gi\|83766858 - gi\|83766858\|dbj\|BAE56998.1\| unnamed protein product [Aspergillus oryzae] gi\|169769060 - gi\|169769060\|ref\|XP_001819000.1\| hypothetical protein [Aspergillus oryzae RIB40]	203.0	[0..28]	[346..10]
gi\|88183830, gi\|... - gi\|88183830\|gb\|EAQ91298.1\| hypothetical protein CHGG_03233 [Chaetomium globosum CBS 148.51], gi\|1162...	202.0	[0..31]	[348..13]
gi\|115435846, gi... - gi\|56783722\|dbj\|BAD81134.1\| unknown protein [Oryza sativa Japonica Group], gi\|215697459\|dbj\|BAG91453...	201.0	[0..7]	[361..13]
gi\|119183425, gi... - gi\|90301538\|gb\|EAS31169.1\| hypothetical protein CIMG_06648 [Coccidioides immitis RS], gi\|119183425\|r...	199.0	[0..30]	[352..12]
gi\|46128237, gi\|... - gi\|46128237\|ref\|XP_388672.1\| hypothetical protein FG08496.1 [Gibberella zeae PH-1], gi\|42549230\|gb\|E...	199.0	[0..32]	[354..21]
gi\|145021398, gi... - gi\|39945432\|ref\|XP_362253.1\| hypothetical protein MGG_04698 [Magnaporthe grisea 70-15], gb\|EAA50939....	197.0	[0..31]	[353..13]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLGYCLKE KKTCVRWVEI YFDDCLCNLN DDVSFALGIA SLLCWGVAEI PQVITNFRTK  60
   61 SSNGVSLSFL LAWVAGDIFN LVGCLLEPAT LPTQFYTALL YTVSTVVLVI QTIYYDYIYK 120
  121 LCRHRRTKIC QKDEEDEEKR PLKPPKTMGS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.0
Match:	PF04193.5
Description:	No description for PF04193.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [151-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AISIPGGSYK DSSRREFYYT SARSLAGSGT PPLRTSYFRV AKSGLRLWQS TMMVRHRTKM  60
   61 RQCRRAGFGT FLAASASLPL QAKSLAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [238-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYAHASSRRL LNERIVEHSA LGQWLGWLMA AIYMGGRIPQ IWLNIKRGSV EGLNPLMFIF  60
   61 ALVANATYVG SILVRTTEWD NIKPNLPWLL DAIVCVVLDL FIILQYIYYK YCRIKSLESR 120
  121 EEDAYGDYVE ASKTFVS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.60206
Match:	PF04193.5
Description:	No description for PF04193.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits