YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CAF1D_ARATH
Organism: Arabidopsis thaliana
Length: 302 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF1D_ARATH.

Description E-value Query
Range
Subject
Range
gi|66851533, gi|... - gi|70998350|ref|XP_753897.1| CCR4-NOT core complex subunit Caf1 [Aspergillus fumigatus Af293], gi|66...
gi|159126368 - gi|159126368|gb|EDP51484.1| CCR4-NOT core complex subunit Caf1, putative [Aspergillus fumigatus A116...
359.0 [0..1] [299..143]

Back

Predicted Domain #1
Region A:
Residues: [1-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEVWRWNKE VEMDSIRDCL KHFSSIAIDT EFPGCLKETP MDASEEIRYR DMKFNVDNTH  60
   61 LIQLGFTLFD RRGITKTWEI NLSDFNEHKC FKNDKSIAFL KSNGLNLDKI GEEGIGIEEF 120
  121 FRDFSQILKE KDGKITWVNF QGSYDNAYLV KGLTGGKPLP ETKEEFHETV EQLLGKFVFD 180
  181 VKKIAESCSG LSSRFGLQRI ADVLQMKRVG KAHHAGSDSE LTARVFTKLT FDLLNSRKQC 240
  241 VRRVDHQQYQ LEQQQLMMTR CYIPIPIPIP RPRSVMFAAH HPNPYFGGGY FGMPVQGRNY 300
  301 VL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 2p51A
Description: No description for 2p51A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle