YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11357725, gi\|...
Organism:	Arabidopsis thaliana
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11357725, gi|....

Description	E-value	Query Range	Subject Range
DEAH2_ARATH - Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsis thaliana GN=At3g62...	326.0	[0..2]	[299..432]
gi\|66525526 - gi\|66525526\|ref\|XP_392081.2\| PREDICTED: similar to CG11107-PA isoform 1 [Apis mellifera]	320.0	[0..2]	[287..427]
gi\|91077430 - gi\|91077430\|ref\|XP_966364.1\| PREDICTED: similar to ATP-dependent RNA helicase [Tribolium castaneum]	320.0	[0..2]	[287..425]
gi\|74139632, gi\|... - gi\|74223034\|dbj\|BAE40659.1\| unnamed protein product [Mus musculus], gi\|74139632\|dbj\|BAE40953.1\| unna...	320.0	[0..2]	[294..505]
gi\|92885144 - gi\|92885144\|gb\|ABE87664.1\| Helicase, C-terminal [Medicago truncatula]	320.0	[0..2]	[299..428]
gi\|68370298 - gi\|68370298\|ref\|XP_685860.1\| PREDICTED: similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (...	320.0	[0..2]	[300..913]
gi\|2696613, gi\|4... - pir\|\|JC5785 ATP-dependent RNA helicase (EC 3.6.-.-) - human, ref\|NP_001349.1\| DEAH (Asp-Glu-Ala-His...	319.0	[0..2]	[289..505]
gi\|73951657 - gi\|73951657\|ref\|XP_864184.1\| PREDICTED: similar to Putative pre-mRNA splicing factor RNA helicase (D...	319.0	[0..2]	[294..506]
gi\|76619665 - gi\|76619665\|ref\|XP_879347.1\| PREDICTED: similar to Putative pre-mRNA splicing factor RNA helicase (D...	318.0	[0..2]	[294..506]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLANTVLT LKGLSVKNLV RFDLIDSPAP DTLARALDDL YHLGALDDDC NLTKTGEMMS  60
   61 EFPLDPQMAK MLIVSPQFNC SNEILSISAM LSVPNCFIRP RGEAQKAADE AKSSFAHIDG 120
  121 DHLTLLNLFH AFLQNNQDPN WCCTKFINYR AMKSAVSVRE QLVRIMLRFQ IK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.36
Match:	2v8oA
Description:	No description for 2v8oA was found.

Predicted Domain #2

Region A:
Residues: [173-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LCSPDFNSRD YYVNIRKALL AGYFMQVAHL ERTGHYLTFR DKDDQVVHLH PSNCLDHKPE  60
   61 WVVYNEYVFT SRNFIRTVTH IRGEWLVDVA PHYYKLANFP SSEAKRVLER HYKKRKLSEE 120
  121 RSCKLYSNS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.886057
Match:	PF07717.7
Description:	No description for PF07717.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.443	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.441	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.436	N/A	N/A	d.20.1	UBC-like
View	Download	0.406	N/A	N/A	d.110.4	SNARE-like
View	Download	0.403	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.389	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.383	N/A	N/A	d.110.4	SNARE-like
View	Download	0.330	N/A	N/A	a.118.9	ENTH/VHS domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits