YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7267971, gi|7...
Organism: Arabidopsis thaliana
Length: 561 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7267971, gi|7....

Description E-value Query
Range
Subject
Range
gi|25365943, gi|... - gi|51536602|gb|AAU05539.1| At2g04280 [Arabidopsis thaliana], gi|4689474|gb|AAD27910.1| expressed pro...
971.0 [0..1] [561..1]

Back

Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRSAFSRT GGFRPENLGQ NAVSLIGSIG FSVLVIGVVV FTIIAATYEP EDPLFHPSDK  60
   61 ITTFLTSNSN ATLKSDDSIV KTGEDFMAAN QTAFGGFINI ADVETSENDS DGNQLDCDTN 120
  121 IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY 180
  181 KDYRRFVIEK SGNCSVSVMG IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND 240
  241 SLPVVESENV FKEG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [255-561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYLVYSGGGD RCKSMNHFLW SFLCALGEAQ YLNRTLVMDL TLCLSSVYTL SGQNEEGKDF  60
   61 RFYFDFEHLK EAASMLDQVQ FWADWGKWYK KNGLKLHLVE DFRVTPMKLV DVKDTLIMRK 120
  121 FGTVEPDNYW YRVCEGETES VVQRPWNLLW KSKRLMEIVS AIASRLNWDY DAIHIERGDK 180
  181 ARNKEVWPNL EKDTSPSSIL STLQDKIEQG RNLYIATNEP ELSFFNPLKD KYKPHFLDEF 240
  241 KDLWDESSEW YSETTKLNGG NPVEFDGYMR ASVDTEVFLR GKKQIETFND LTNDCRDGIG 300
  301 TCNVAAS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.956
Match: 2hhcA
Description: No description for 2hhcA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle