YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SDHB1_ARATH
Organism: Arabidopsis thaliana
Length: 279 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDHB1_ARATH.

Description E-value Query
Range
Subject
Range
gi|12049598 - gi|12049598|emb|CAC19855.1| mitochondrial succinate dehydrogenase iron-sulphur subunit [Arabidopsis ...
270.0 [0..1] [279..1]

Back

Predicted Domain #1
Region A:
Residues: [1-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD  60
   61 NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR SCREGICGSC AMNIDGCNGL 120
  121 ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ 180
  181 SKKDRAKLDG MYECILCACC STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE 240
  241 AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.0
Match: 1yq3B
Description: Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle