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View Structure Prediction Details

Protein: gi|25354022, gi|...
Organism: Arabidopsis thaliana
Length: 286 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25354022, gi|....

Description E-value Query
Range
Subject
Range
DAPF_PHOPR - Diaminopimelate epimerase OS=Photobacterium profundum GN=dapF PE=1 SV=1
DAPF_PHOPR - Diaminopimelate epimerase OS=Photobacterium profundum (strain SS9) GN=dapF PE=1 SV=1
270.0 [0..15] [286..5]

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Predicted Domain #1
Region A:
Residues: [1-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKKRVKYF IVDAFAESAF KGNPAAVCFL EDDNERDDAW LQSLATEFNI SETCFLTPII  60
   61 GDLPRFRLRW FTPVAEVDLC GHATLASAHV LFSTGLVGSE TVEFDTLSGI LTAKHLKNDD 120
  121 DGEESSIELD FPVVPTYEVN YIDDDLSLFS KALNGATILD VKATKKDLLV VLSSWEAVID 180
  181 LKPRLDEISK CPCEGMMVTA AASDGSTYDF CSRYFAPRFG INEDPVTGSA HCALAHYWSL 240
  241 RMNKCDFFAY QASSRGGTLK VHLDKEKQRV LLRGKAVTVM EGYVLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.0
Match: 1s7jA
Description: Crystal structure of phenazine biosynthesis protein PhzF family (Enterococcus faecalis)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.00848565859536 bayes_pls_golite062009
amino-acid racemase activity 0.0628393252100677 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle