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View Structure Prediction Details

Protein: LOG4_ARATH
Organism: Arabidopsis thaliana
Length: 215 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOG4_ARATH.

Description E-value Query
Range
Subject
Range
LOG3_ARATH - Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 S...
245.0 [0..1] [215..1]

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Predicted Domain #1
Region A:
Residues: [1-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVNNETMQK SKFGRICVFC GSSQGKKSSY QDAAVDLGNE LVLRNIDLVY GGGSIGLMGL  60
   61 VSQAVHDGGR HVIGVIPKTL MPRELTGETV GEVRAVADMH QRKAEMARHS DAFIALPGGY 120
  121 GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISTN ARQIIISAPT 180
  181 AKELVKKLEE YSPCHESVAT KLCWEIERID YSSED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.09691
Match: 2a33A
Description: X-Ray Structure of a Lysine Decarboxylase-Like Protein from Arabidopsis Thaliana Gene AT2G37210
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.459062360506835 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle