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View Structure Prediction Details

Protein: CAF1C_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF1C_ARATH.

Description E-value Query
Range
Subject
Range
gi|66851533, gi|... - gi|70998350|ref|XP_753897.1| CCR4-NOT core complex subunit Caf1 [Aspergillus fumigatus Af293], gi|66...
gi|159126368 - gi|159126368|gb|EDP51484.1| CCR4-NOT core complex subunit Caf1, putative [Aspergillus fumigatus A116...
369.0 [0..3] [300..140]

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Predicted Domain #1
Region A:
Residues: [1-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN  60
   61 VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK SIAFLKSNGL NLDKIREEGI 120
  121 GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG 180
  181 KFVFDVKKIA ESCSGLSSQF GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN 240
  241 SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR 300
  301 MPVQGMNYVL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.522879
Match: 2p51A
Description: No description for 2p51A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle