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View Structure Prediction Details

Protein: GLK1_ARATH
Organism: Arabidopsis thaliana
Length: 420 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLK1_ARATH.

Description E-value Query
Range
Subject
Range
gi|92887685 - gi|92887685|gb|ABE89013.1| Homeodomain-related [Medicago truncatula]
237.0 [0..1] [417..1]
GLK2_ARATH - Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=1 SV=1
229.0 [0..1] [417..1]
gi|223946903, gi... - gi|223946903|gb|ACN27535.1| unknown [Zea mays], gi|162459635|ref|NP_001105513.1| hypothetical protei...
216.0 [0..1] [415..1]
GLK1_ORYSJ - Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica GN=GLK1 PE=2 SV=1
216.0 [0..1] [416..1]
gi|13940498 - gi|13940498|gb|AAK50393.1|AF318581_1 putative transcription factor OsGLK1 [Oryza sativa]
214.0 [0..1] [416..1]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD  60
   61 VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT KGSSGKGEEV VSKRDDVAAE 120
  121 TVTYDGDSDR KRKYSSSASS KNNRISNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [149-228]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGKRKVKVDW TPELHRRFVE AVEQLGVDKA VPSRILELMG VHCLTRHNVA SHLQKYRSHR  60
   61 KHLLAREAEA ANWTRKRHIY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.39794
Match: 1irzA
Description: Arr10-B
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [229-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVDTGANLNG RTKNGWLAPA PTLGFPPPPP VAVAPPPVHH HHFRPLHVWG HPTVDQSIMP  60
   61 HVWPKHLPPP STAMPNPPFW VSDSPYWHPM HNGTTPYLPT VATRFRAPPV AGIPHALPPH 120
  121 HTMYKPNLGF GGARPPVDLH PSKESVDAAI GDVLTRPWLP LPLGLNPPAV DGVMTELHRH 180
  181 GVSEVPPTAS CA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle