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View Structure Prediction Details

Protein: gi|6899888, gi|1...
Organism: Arabidopsis thaliana
Length: 136 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6899888, gi|1....

Description E-value Query
Range
Subject
Range
gi|3096945, gi|7... - pir||T05296 probable auxin-induced protein T4L20.340 - Arabidopsis thaliana, gi|7270427|emb|CAB80193...
140.0 [0..4] [97..16]
gi|217071626, gi... - gi|92888355|gb|ABE89373.1| Auxin responsive protein [Medicago truncatula], gi|92872467|gb|ABE81082.1...
135.0 [0..5] [97..17]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGEKILKS VHSNRPNNVK SNSKHGIKDV PKGCLAIKVG SKEEEKQRFV VPVFYFNHPL  60
   61 FMQLLREAEE EYGFEQKGTI TIPCHVEVFR YVQDMINRER SLDDDDDASK QTGCGAKHGL 120
  121 THKIRSRSSS GVWKYP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 42.886057
Match: PF02519.5
Description: No description for PF02519.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.468 N/A N/A d.13.1 HIT-like
View Download 0.439 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.434 N/A N/A c.54.1 IIA domain of mannose transporter, IIA-Man
View Download 0.408 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.408 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.396 N/A N/A d.58.34 Formiminotransferase domain of formiminotransferase-cyclodeaminase.
View Download 0.385 N/A N/A d.319.1 Description not found.
View Download 0.360 N/A N/A c.3.1 FAD/NAD(P)-binding domain
View Download 0.352 N/A N/A d.110.4 SNARE-like
View Download 0.352 N/A N/A d.110.4 SNARE-like
View Download 0.261 N/A N/A c.47.1 Thioredoxin-like
View Download 0.255 N/A N/A c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.245 N/A N/A c.55.4 Translational machinery components
View Download 0.235 N/A N/A c.48.1 TK C-terminal domain-like


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