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View Structure Prediction Details

Protein: CARA_ARATH
Organism: Arabidopsis thaliana
Length: 430 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CARA_ARATH.

Description E-value Query
Range
Subject
Range
gi|95134648, gi|... - gi|95929150|ref|ZP_01311894.1| carbamoyl-phosphate synthase, small subunit [Desulfuromonas acetoxida...
452.0 [0..57] [429..2]

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Predicted Domain #1
Region A:
Residues: [1-430]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMATRTLGF VLPTSLSSQP SFDRRGGGFR VSVIRCSTSP LTFPTSGVVE KPWTSYNARL  60
   61 VLEDGSIWPA KSFGAPGTRI AELVFNTSLT GYQEILTDPS YAGQFVLMTN PQIGNTGVNP 120
  121 DDEESGQCFL TGLVIRNLSI STSNWRCTKT LADYLTERDI MGVYDLDTRA ITRRLREDGS 180
  181 LIGVLSTEQS KTDDELLQMS RSWDIVGIDL ISDVSCKSPY EWVDKTNAEW DFNTNSRDGK 240
  241 SYKVIAYDFG IKQNILRRLS SYGCQITVVP STFPAAEALK MNPDGILFSN GPGDPSAVPY 300
  301 AVETVKELLG KVPVYGICMG HQLLGQALGG KTFKMKFGHH GGNHPVRNNR TGQVEISAQN 360
  361 HNYAVDPASL PGGVEVTHVN LNDGSCAGLS FPEMNVMSLQ YHPEASPGPH DSDNAFREFI 420
  421 ELMKRSKQSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 126.0
Match: 1bxrB
Description: Carbamoyl phosphate synthetase, small subunit N-terminal domain; Carbamoyl phosphate synthetase, small subunit C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 11.6556846811261 bayes_pls_golite062009
carbamoyl-phosphate synthase activity 11.614541080865 bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor 8.83104490344765 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 6.7523653122648 bayes_pls_golite062009
anthranilate synthase activity 2.51214170411838 bayes_pls_golite062009
phosphoribosylformylglycinamidine synthase activity 1.51568729563523 bayes_pls_golite062009
ligase activity 1.45023593909062 bayes_pls_golite062009
oxo-acid-lyase activity 1.35896725827905 bayes_pls_golite062009
catalytic activity 0.902495165806215 bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity 0.270391651600004 bayes_pls_golite062009
nucleic acid binding 0.12569720972861 bayes_pls_golite062009
carbon-carbon lyase activity 0.0769356405014503 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle