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View Structure Prediction Details

Protein: gi|55167912, gi|...
Organism: Arabidopsis thaliana
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55167912, gi|....

Description E-value Query
Range
Subject
Range
gi|20466726, gi|... - gi|23198206|gb|AAN15630.1| unknown protein [Arabidopsis thaliana], gi|20466726|gb|AAM20680.1| unknow...
674.0 [0..1] [385..1]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGYYSSKK TDDICDDVCG QDGSRAAKAF SRVRCVLRGF DFKTYIFFFT IVPIFIFGVY  60
   61 LHGQKLTYFL RPLWESPPKP FQTLPHYYHE NASMATLCSL HGWKHRESPR RVFDAVLFSN 120
  121 EVDMLTIRWK ELYPYITQFV ILESNSTFTG LPKPLVFNGN RAKFEFAEPR LSYGNIAGRF 180
  181 KKGENPFVEE AYQRIALDQL I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [202-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLAGIEEDDL LIMSDVDEIP SAHTINLLRW CDGYPPILHL QLKNYLYSFE YFVDNKSWRA  60
   61 SIHQYKPGKT RYAHFRQG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [280-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTLLADSGWH CSFCFRHISE FIFKMKAYSH NDRVRFSHYL NPKRIQDVIC KGTDLFDMLP  60
   61 EEYTFREIIG KLGPIPRSYS AVHLPAHLIE KAESYKYLLP GNCIRESG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle