YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GDU1_ARATH
Organism: Arabidopsis thaliana
Length: 158 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDU1_ARATH.

Description E-value Query
Range
Subject
Range
gi|110743812 - gi|110743812|dbj|BAE99741.1| hypothetical protein [Arabidopsis thaliana]
234.0 [0..1] [158..1]

Back

Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLSVQSKF EDVATSTSVN HHGVTPQSPW HSPVPYLFGG LAAMLGLIAF ALLILACSYW  60
   61 RLSSSGEEDG QNVDEEKESR SGDKAANGAY EEKFLVIMAG EDLPRYLATP AMKKCTCGGH 120
  121 EGKMVISQEE SVAKEEEKMR EGEEEKVKDT GETTTTSH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.267 g.10.1 Hairpin loop containing domain-like
View Download 0.234 d.110.4 SNARE-like
View Download 0.206 a.3.1 Cytochrome c


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle