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View Structure Prediction Details

Protein: gi|15231952, gi|...
Organism: Arabidopsis thaliana
Length: 595 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15231952, gi|....

Description E-value Query
Range
Subject
Range
ZTP50_ARATH - Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650 PE=2 SV=2
515.0 [0..1] [595..25]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHSSCKGLV LLLFLFVVVF IGNTDANAQW EVSHKVRASP HENMGRNVID GSGVEKTLHD  60
   61 IGMGEKRGTH NKVSVSTVAL FTLAMAAATG LGAVPFFFVE LDPQWAGICN GMAAGVMLAA 120
  121 SFDLVKEGQE HGSGNWVVTG ILAGALFIWL CKQILEQY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEVSMLDIKG ADATKVVLVI GIMTLHSFGE GSGVGVSFAG SKGFSQGLLV TLAIAVHNIP  60
   61 EGLAVSMVLA SRGVSPQNAM LWSIITSLPQ PLVAVPAFLC ADAFSKFLPF CTGFAAGCMI 120
  121 WMVIAEVLPD AFKEASPSQV ASAATISVAS MEALSTLFES FTHDYNSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [327-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DASGFFVSLL FGLGPLLGGV FLVASAVTFR LQHALLMGVA SGIAFVLGLW RPLQLLLSAK  60
   61 MGLIPLVSLL AIGAGLSHFT SSTILNVTGR KKSRA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [422-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSLINPVTNF PTSVITLQSL LACGAVGFHA LAEGLALGVA APNAYGLGRH MVLPVSLHGL  60
   61 PRGTAVASCV FGATDSWHAA LAAAALIGFV GPISAIGSIL AGIDYSGLDH VMVVACGGLL 120
  121 PSFWQVIKRA VRLERRKGSV GMVLGLACAV VCLTFTRLVC LHTPYCNSAP EAVR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle