YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15228652, gi|...
Organism: Arabidopsis thaliana
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15228652, gi|....

Description E-value Query
Range
Subject
Range
gi|21593560 - gi|21593560|gb|AAM65527.1| unknown [Arabidopsis thaliana]
169.0 [0..16] [278..42]

Back

Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGLALNRC SVSVCRTAVT LLNRPTVSVA RSLKFSRRLI GNCSIAPADP YVVADDDKYG  60
   61 NKQVISLTPR LYDYVLSNVR EPKILRQLRE ETSKMRGSQM QVSPDQAQLL AMLVQMLAAE 120
  121 RCIEVGVYTG YSSLAVALVL PESGCLVACE RDSNSLEVAK RYYELAGVSH KVNVKQGLAA 180
  181 ESLKSMIQNG EGASYDFAFV DADKRMYQDY FELLLQLVRV GGVIVMDNVL WHGRVSDPMV 240
  241 NDAKTISIRN FNKKLMDDKR VSISMVPIGD GMTICRKR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.0
Match: 1suiA
Description: Alfalfa caffeoyl coenzyme A 3-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.62377578202456 bayes_pls_golite062009
transferase activity 1.20063885869845 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 1.05991383541555 bayes_pls_golite062009
methyltransferase activity 1.04943568976829 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.414568039011584 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle