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View Structure Prediction Details

Protein: ETOL1_ARATH
Organism: Arabidopsis thaliana
Length: 888 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ETOL1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTFYPSDSC KESQLDSLNP QSWLQVERGK LSSSASSSAP LCRESFIKVP EPQILPHYKP  60
   61 LDYVEVLAQI HEELDTCPLQ ERSILYLLQY QVFRGLGETK LRRRSLQSAW QEATTVHEKV 120
  121 VFGSWLRYEK QGEEVITDLL SSCGKYSEE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVPLDIASYF PATTASSPEA ASVKTNRSVS KNVVFKIGEE KIACQRRKIA SLSAPFHAML  60
   61 YGNFTESLLD EIDMSENHVS SSAMRVVRDF SVVGVLIGVS KNLLLEVLVF ANKFCCERLK 120
  121 DACDRELASL ISSMECAIEL MDFALEENSP ILASSCLQVF LYEMPDSLND ERVVEVLTRV 180
  181 NRSQVSTMAG KAPFSLYSCL SEVSMCIDPR SDRTLGFLEK LVDFAEN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [377-474]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRQQVLGFHR LGCMRLLRKE YREAEEAFET AFNLGHVYSA TGLARLGYIQ GHRLWAYEKL  60
   61 SSVISSVSPP LGWMYQERSF YCEGDKKLED LEKATELD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.09691
Match: 2j9qA
Description: No description for 2j9qA was found.

Predicted Domain #4
Region A:
Residues: [475-888]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTLTYPYMYR AVTRMSKQNA KAALEEINRI LGFKLALECL EIRFCLYLGM DDYEAALRDI  60
   61 QAALTLCPDY RMFDGKVAGR QLQTLVYEHV ENWTTADCWM QLYEKWSNVD DIGSLSVIYQ 120
  121 MLESDACKGV LYFRQSLLLL RLNCPEAAMR SLQLAREHAS SDHERLVYEG WILYDTGHCE 180
  181 EGLQKAKESI GIKRSFEAYF LQAYALAESS LDPSSSSTVV SLLEDALKCP SDRLRKGQAL 240
  241 NNLGSVYVDC EKLDLAADCY INALKVRHTR AHQGLARVHF LRNDKAAAYE EMTRLIEKAQ 300
  301 NNASAYEKRS EYCDRELAKS DLEMVTRLDP LRVYPYRYRA AVLMDSRKER EAITELSRAI 360
  361 AFKADLHLLH LRAAFHEHIG DVTSALRDCR AALSVDPNHQ EMLELHSRVN SHEP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.0
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle