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View Structure Prediction Details

Protein: AP4M_ARATH
Organism: Arabidopsis thaliana
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP4M_ARATH.

Description E-value Query
Range
Subject
Range
gi|28949965 - gi|28949965|emb|CAD70726.1| probable clathrin assembly protein AP47 [Neurospora crassa]
435.0 [0..2] [451..1]

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Predicted Domain #1
Region A:
Residues: [1-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF  60
   61 HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL NEDSFRKNFV LVYELLDEVI 120
  121 DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG 180
  181 GRRREEIFVD IIEKISVTFS SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG 240
  241 RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF 300
  301 HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD 360
  361 FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE AGPVSMTFTI PMYNVSKLQV 420
  421 KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 118.0
Match: 1w63M
Description: AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle