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View Structure Prediction Details

Protein: ASHH3_ARATH
Organism: Arabidopsis thaliana
Length: 363 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASHH3_ARATH.

Description E-value Query
Range
Subject
Range
gi|109504622, gi... - gi|109505410|ref|XP_001066409.1| PREDICTED: similar to nuclear receptor binding SET domain protein 1...
278.0 [0..3] [329..1831]

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Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR  60
   61 VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK CGSECNNKPF QQRHVKKMKL 120
  121 IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV 180
  181 IDATHKGNKS RYINHSCNPN TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD 240
  241 QDCHCGAVGC RRKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.221849
Match: 2r3aA
Description: No description for 2r3aA was found.

Predicted Domain #2
Region A:
Residues: [255-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVKPSKPKIA SDEAFNLVAH ELAQTLPKVH QNGLVNRHID AGKSWNNLSQ RDTCSRNCIG  60
   61 VVIRLSRPTS DRCFGLVRHF DEYSRKHSVM FEDGVTEFVD MSREDWEIV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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