YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238478996, gi...
Organism:	Arabidopsis thaliana
Length:	752 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238478996, gi....

Description	E-value	Query Range	Subject Range
gi\|17064846 - gi\|17064846\|gb\|AAL32577.1\| putative protein kinase [Arabidopsis thaliana]	505.0	[0..1]	[752..1]
CDKG2_ORYSI - Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. indica GN=CDKG-2 PE=3 SV=1 CDKG2_ORYSJ - Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2	370.0	[0..1]	[752..1]
gi\|1082283 - gi\|1082283\|pir\|\|E54024 protein kinase (EC 2.7.1.37) cdc2-related PITSLRE alpha 2-1 - human	358.0	[0..2]	[731..21]
gi\|73956552 - gi\|73956552\|ref\|XP_856985.1\| PREDICTED: similar to cell division cycle 2-like 1 (PITSLRE proteins) i...	355.0	[0..2]	[731..21]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGRNIRYP DHELRDQESN SRFSRRDSAY ANEDYNHVRN GAIDNGKGRV SNLRHGDRDR  60
   61 IKSGARQEEN KMVSSGFRLS KSNPGSREVF IDLGPKRCGF SARSVDREPG ELSSESGSDD 120
  121 LIESESLAKV NGVVKEVENR AQSPVEKKRK FSPIVWDRDD HERSNLSRNE KPVEVTPLPP 180
  181 PPPLVKRSSQ SPSVSCGGNS HYSPAKSDMH QDPVEVGVSA VSMPALSPSV EMSSLCVVEQ 240
  241 SSNAEQDDKQ EHATHLEEDE NMPTRHISSS RWAAG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [276-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSPTDEVEI VEEVGEKKRR KKPFPVQGRF RNTSQTPEVG ELVREGYRSS DSDERGHHSL  60
   61 PGSRDDFEER DAVKSDKMEI DEEEHRRENS VDSLSETDSD DEYVRHETPE PASTPLRSIN 120
  121 MLQGCR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [402-752]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVDEFERLNK IDEGTYGVVY RAKDKKTGEI VALKKVKMEK EREGFPLTSL REINILLSFH  60
   61 HPSIVDVKEV VVGSSLDSIF MVMEYMEHDL KALMETMKQR FSQSEVKCLM LQLLEGVKYL 120
  121 HDNWVLHRDL KTSNLLLNNR GELKICDFGL ARQYGSPLKP YTHLVVTLWY RAPELLLGAK 180
  181 QYSTAIDMWS LGCIMAELLM KAPLFNGKTE FDQLDKIFRI LGTPNESIWP GFSKLPGVKV 240
  241 NFVKHQYNLL RKKFPATSFT GAPVLSDAGF DLLNKLLTYD PERRITVNEA LKHDWFREVP 300
  301 LPKSKDFMPT FPAQHAQDRR GRRMVKSPDP LEEQRRKELT QTELGSGGLF G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.522879
Match:	1e9hA
Description:	Cyclin-dependent PK, CDK2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits