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View Structure Prediction Details

Protein: gi|124300980, gi...
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124300980, gi....

Description E-value Query
Range
Subject
Range
gi|82703356, gi|... - gi|82703356|ref|YP_412922.1| heat shock protein DnaJ [Nitrosospira multiformis ATCC 25196], gi|82411...
214.0 [0..72] [277..11]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSDGGGENN RAEADQLLAT SEKLLASSDF HGAKTFAIRA CEADPSRTDA ADYILAIADT  60
   61 LLAGETTIGD SKVPDWYAVL RISRLTQSPE HVATQYRRLT LLLKLNINRL PFADQALKLV 120
  121 SDAWYVLSDP PRKSIYDREL QLSQTGQSEK FQDSPLQSQA ETLENPTATS FWTACPY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.221849
Match: 1bq0A
Description: J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [178-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CFSLFEYPKG YEECTLRCQQ CRKAFEAVKT QTPPVESNGE GVYFGSWAMF PVGLTSHPNT  60
   61 SNWSPISHLS VCTGQSSSDQ QSNLKATPRN DDVDIYIAIS DDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.154902
Match: 1nltA
Description: The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle