| Protein: | TAF8_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 353 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF8_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
332.0 | [0..1] | [353..1] |
|
|
245.0 | [0..38] | [353..57] |
|
|
231.0 | [0..4] | [312..7] |
|
|
230.0 | [0..3] | [321..6] |
|
|
230.0 | [0..1] | [321..7] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL 60
61 QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNN
|
| Detection Method: |  |
| Confidence: | 13.154902 |
| Match: | 1tafA |
| Description: | TAF(II)42 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [99-172] |
1 11 21 31 41 51
| | | | | |
1 GEQGISSESC SLGRSIKLRE IIDFVNSSEE VPFSQPLPSF PVAISDRSRK MIPSFVEIGE 60
61 TPPGKHIPLW LPAF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.502 | a.118.1 | ARM repeat |
| View | Download | 0.364 | a.4.1 | Homeodomain-like |
| View | Download | 0.361 | a.4.1 | Homeodomain-like |
| View | Download | 0.352 | a.101.1 | Uteroglobin-like |
| View | Download | 0.326 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.326 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.297 | a.4.1 | Homeodomain-like |
| View | Download | 0.265 | a.4.1 | Homeodomain-like |
| View | Download | 0.253 | a.4.1 | Homeodomain-like |
| View | Download | 0.227 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [173-353] |
1 11 21 31 41 51
| | | | | |
1 PDPHTYKETP MWIERVSDPR GDKIEQARQR RKAERALLSL QRKLVCKISS RNPVWGDMDG 60
61 VKEEMRDDES ELRSVSSGEK VESLNRDGLS VIEAFAPAME AARDGFSSEA HTEWKKNKPV 120
121 ALSKLRTEKK FLGQPLDLSL QMKGEDRPIS FVREEDRDDK RRRAEFILRQ CMENPVDLNQ 180
181 L
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
