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View Structure Prediction Details

Protein: gi|15232679, gi|...
Organism: Arabidopsis thaliana
Length: 1171 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15232679, gi|....

Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHEPSSPSS NLVSNPANLS ASGLDYSSDL SNKRVSDGII SGFGSEQVSI DATNRNNPNL  60
   61 GNKRSDMDDE EL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKVKFLCSYN GKIIPRPSDG MLRYVGGQTR IVSVKKNVRF DEFEQKMIQV YGHPVVVKYQ  60
   61 LPDEDLDALV SVSSSEDIDN MMEEFEKLVE RSSDGSGKLR VFLFDASSSE VDDSFGILEY 120
  121 GDGVDIGQRY VEAVNGVVVS KESVASGSSN PNSDFSGVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.522879
Match: 2cu1A
Description: Solution structure of the PB1 domain of human protein kinase MEKK2b
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [232-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVDSLGVGQS DFVATTWTSS NFSPQTYHSN VSRLVPPDPR SSAYVVPMTV HADPPHSFQL  60
   61 ETVSEKPIVG KMQQQQQGYT TPSEHHPPAY VESRQEALRQ PDIVHSPI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [340-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLLPSSTSLF SQQPFQDSPL SVSSHQFLPA AHMSMAPLNS QISSTPVLIN PVMQTQENLL  60
   61 GNYHAAQKLV PLPTEPRNTA YQGTISPGIP FDGYGGSQVP PSNHVVLPDG SFYQQVTMAE 120
  121 SFQRVNDCHM CQTSFPHMHS DPIMREGNDG STMYVPYVSS AFYASRPDDI MRIQQTDKFT 180
  181 GQQSFLNHS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [529-617]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHQERDTLHN ANLATAQVET TEPFVNEIVR DVPIKVQVTR QQQHPVDPSV AYAQCRELSG  60
   61 LVDNVNIHAP EIYSNCQNFI SPVDKIGKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [618-1171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIMGTSSQQM ARKNMFLHDT SGQSPVSPNI DHTDSAKRLT RVVLPGHESQ PKESCVPTQS  60
   61 PLLGNPGLYL QSLVGGQQFD SAEAQSSNPA YDVVESTFDA ANLPSSLSSN PDAANLPSSL 120
  121 SSSVGGADHK ESSKSLFSNQ DPWNLQTNSN EDVKPDLLNS SKVILENDLL IGLWFSLKGS 180
  181 EEEHIKQELQ NVAEGVAASV LQSSTPSYHE PPIKVDEYAF NSKGEVSRND EMKQQSTHFK 240
  241 DIRNQLLERL NFGYSGSDSL DQLQIIKDSD LEELRELGSG TFGTVYHGKW RGTDVAIKRI 300
  301 NDRCFAGKPS EQERMIDDFW NEAQNLAGLH HPNVVAFYGV VLDSPGGSVA TVTEYMVNGS 360
  361 LRNALQKNVR NFDRCKRQLI AMDIAFGMEY LHGKKIVHFD LKSDNLLVNL RDPHRPICKV 420
  421 GDLGLSKVKC QTLISGGVRG TLPWMAPELL NGTSSLVSEK VDVFSFGIVL WELFTGEEPY 480
  481 ADLHYGAIIG GIVSNTLRPQ IPDFCDMDWK LLMERCWSAE PSERPSFTEI VNELRTMATK 540
  541 LPSKEQGSTQ GPQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 101.0
Match: 2h8hA
Description: No description for 2h8hA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle