| Protein: | PPD6_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 262 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPD6_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
261.0 | [0..2] | [262..4] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MATASLVPTS KIFSVSPKSS ASIKARSRVV VASSQQQQQP RRRELLLKSA VAIPAILQLK 60
61 EAPISAAREV EVGSYLPLSP SDPSFVLFKA KPSDT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.788 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.646 | a.2.3 | Chaperone J-domain |
| View | Download | 0.593 | a.64.1 | Saposin |
| View | Download | 0.580 | a.2.3 | Chaperone J-domain |
| View | Download | 0.564 | a.2.3 | Chaperone J-domain |
|
Region A: Residues: [96-262] |
1 11 21 31 41 51
| | | | | |
1 PALRAGNVQP YQFVLPPNWK QLRIANILSG NYCQPKCAEP WIEVKFENEK QGKVQVVASP 60
61 LIRLTNKPNA TIEDLGEPEK VIASLGPFVT GNSYDSDELL KTSIEKIGDQ TYYKYVLETP 120
121 FALTGSHNLA KATAKGSTVV LFVVSATEKQ WQSSQKTLEA ILDSFQL
|
| Detection Method: | |
| Confidence: | 51.0 |
| Match: | 1v2bA |
| Description: | Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants |
Matching Structure (courtesy of the PDB): |
|
