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View Structure Prediction Details

Protein: SMXL4_ARATH
Organism: Arabidopsis thaliana
Length: 1017 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SMXL4_ARATH.

Predicted Domain #1
Region A:
Residues: [1-944]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTGAYTVHQ TLTPEAASVL KQSLTLARRR GHSQVTPLHV ASTLLTSSRS NLFRRACLKS  60
   61 NPFTALGRQM AHPSLHCRAL ELCFNVSLNR LPTNPNPLFQ TQPSLSNALV AALKRAQAHQ 120
  121 RRGCVEQQQS QQNQPFLAVK VELEQLVVSI LDDPSVSRVM REAGLSSVSV KSNIEDDSSV 180
  181 VSPVFYGSSS SVGVFSSPCS PSSSENNQGG GTLSPNPSKI WHAHLTNHHS FEQNPFFHFP 240
  241 KGKTFTPDQA FPVREDANPV IEVLLGKKNN KKRNTVIVGD SVSLTEGVVA KLMGRIERGE 300
  301 VPDDLKQTHF IKFQFSQVGL NFMKKEDIEG QVRELKRKID SFTSWGGKGV IVCLGDLDWA 360
  361 VWGGGNSASS SNYSAADHLV EEIGRLVYDY SNTGAKVWLL GTASYQTYMR CQMKQPPLDV 420
  421 HWALQAVSIP SGGLSLTLHA SSSEMASQVM EMKPFRVKEE EEGAREEEEE DKLNFCGECA 480
  481 FNYEKEAKAF ISAQHKILPP WLQPHGDNNN INQKDELSGL RKKWNRFCQA LHHKKPSMTA 540
  541 WRAEQSSSVL PGSLMDSSLK QNSRASSSVA KFRRQNSCTI EFSFGSNRQE GLKKTDELSL 600
  601 DGFKSNNDEG VKTKITLALG HSPFPSDSEN SEEEEPEKAI KMSKLLEKLH ENIPWQKDVL 660
  661 PSIVEAMEES VKRSKRKDAW MLVSGNDVTA KRRLAITLTT SLFGSHENML KINLRTSKAS 720
  721 EACEELKNAL KKKEEVVILI ERVDLADAQF MNILVDRFEA GDLDGFQGKK SQIIFLLTRE 780
  781 DDECVENEHF VIPMVLNCNK SGSGLVNNKR KPEYDAAPTM IKKKNPRIEE DDDESNVACD 840
  841 ISNIKKEFSR QLKFESNALD LNLRVDADED EEEEAKPATE ISSGFEERFL DSIQNRFDFT 900
  901 VLSDEDITKF FVTKIKDSCE EILGQREERF GFTVDAELIE KFYK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 148.0
Match: 1qvrA
Description: Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [945-1017]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCGFFANGLF EEWVKEVFQR GLVTVKNGGK EGISVINLCL GGIDMIDQGE VYEEEEGFMG  60
   61 TCLPNRIHVS FVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.0
Match: 1rr9A
Description: Catalytic domain of E.coli Lon protease
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle