YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|6692256, gi|2...
Organism: Arabidopsis thaliana
Length: 636 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6692256, gi|2....

Description E-value Query
Range
Subject
Range
gi|30693481, gi|... - gi|30693481|ref|NP_851107.1| structural constituent of ribosome [Arabidopsis thaliana], gi|21436077|...
603.0 [0..139] [636..85]

Back

Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIVTTKTKT YTTTNFDFSN KGFGVGGLKQ FVYGNTFIVL DAFWVSFSNL FRVNPDKETS  60
   61 LVLFEKQNTK DSSVFGDHQD QNQICGTQDD DQMESSLVSI SKRCEFYSDN KSIVGFVEEP 120
  121 KAFSFKFHEY SAITVQEEEK KKMVSFSDEK TSSMVLEKSE SDGFMKEHVK EEMLVYEFMS 180
  181 CGVLKESLVH ENLVGGEDNL FDDDDGFIEL NPSLQISNFA YGEEEEEEFI HREEEMKMG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [240-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDEQEEVYDE FDDGSDSDDD EFEHSDVIEK LKTELRTART GGLCTILEES ETPLQELKPL  60
   61 KIEPKPDQHK DRIAEIHKVY KNYAVKMRKL DVIDSQTMHS ISLLKLKDSS KPSRNTDKPP 120
  121 KSSLHQNIWP FKKHTLECDP SERLVKEASR DFETVYVGQV CLSWEMLRWQ YDKVLEFDSQ 180
  181 VTTYQYNLVA GEFQLFQVLL QRFVENEPFQ NSSRVETYLK NRRHFQNFLQ IPLVRDD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [477-636]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSSKKKCRYE GEFAVKTEML REIIRESMSV FWEFLCADKD EFTSMMKVSH QTQVSPQDSL  60
   61 DLELLTDIRT HLQKKEKKLK EIQRSQSCIV KKLKKNESKS SIGVKDELLI AKIELRLVSR 120
  121 VMYMSKLTTE KLHWCQEKLE KISFNGRKIH MEPYFSLLPC 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle