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View Structure Prediction Details

Protein: gi|18397898, gi|...
Organism: Arabidopsis thaliana
Length: 420 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18397898, gi|....

Description E-value Query
Range
Subject
Range
gi|21555160, gi|... - gi|9759526|dbj|BAB10992.1| unnamed protein product [Arabidopsis thaliana], gi|31711882|gb|AAP68297.1...
472.0 [0..4] [420..5]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGGGRVYWG KKLDKEMEDA AVVDGGGSNG VVVIFVWSSI NENQLMNFVD LYSSLGWNSL  60
   61 VCRADFLTAV YPEMALSLAF HLLSELVEEL KSRPCPVIFL AFSGAPKACM YKVLQVIMDD 120
  121 CEAQIHPDDS QLVRTCLSGH VYDSGPLDFT SDLNVKFALH PTIRRMSGPS RLVSWVAKGI 180
  181 SSGLDGLYLT RFESQRSEYW QALYSSVEIG APYLILCSEN DELAPLQVIS SFTHQLQELG 240
  241 GEVKVVKWKN SPHAGHYAHN PIQYRAVISN FLEKAISV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 2og1A
Description: No description for 2og1A was found.

Predicted Domain #2
Region A:
Residues: [279-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLHKIRQLGE RAHTHDEISE LICDLQKVAV NSNQSLRRVA TGPCDHFFLP SSAPYQSNSN  60
   61 NSDPSSSQEE QRERSSFRPL QPTSINAHSV LGQFLFDSCV PKNIEGWDIR FAGCLNGQPY 120
  121 ATSSSRKNSN LGFKKRFFRS RL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle