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View Structure Prediction Details

Protein: PRS4B_ARATH
Organism: Arabidopsis thaliana
Length: 443 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRS4B_ARATH.

Description E-value Query
Range
Subject
Range
PRS4A_ARATH - 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=1 SV=1
380.0 [0..1] [443..1]

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Predicted Domain #1
Region A:
Residues: [1-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQGPSGGLN RQGDRKPDGG EKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK  60
   61 CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS KVDDLRGTPM SVGNLEELID 120
  121 ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE 180
  181 KAPLESYADI GGLEAQIQEI KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK 240
  241 AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA 300
  301 NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD 360
  361 IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA ICTEAGLLAL RERRMKVTHV 420
  421 DFKKAKEKVM FKKKEGVPEG LYM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.0
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle