YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: COQ5_ARATH
Organism: Arabidopsis thaliana
Length: 288 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ5_ARATH.

Description E-value Query
Range
Subject
Range
UBIE_VIBVU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio vulnificus (strain CMCP6) GN=...
UBIE_VIBVY - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio vulnificus (strain YJ016) GN=...
UBIE_VIBVU - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Vibrio vulnificus GN=ubiE PE=3 SV=1
238.0 [0..13] [287..2]

Back

Predicted Domain #1
Region A:
Residues: [1-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRSVSRRL GSRILNQRSF VASLHSHATS FGFQEVKEEE KSKLVGNVFT NVASSYDIMN  60
   61 DVMSGGLHRL WKERLVGKLS PFAGMKHLDV AGGTGDVAFR IYDAVYSVKR RALQKVDEAS 120
  121 LEETQIYVCD INPNMLNVGK QRAAERGLRD NKSLVWVEGD AEALSFDDNS MDGYTIAFGI 180
  181 RNVTHIEKAL AEAYRVLKRG GRFLCLELSH VEIPVFKNLY DLYSFQVIPN LGELIAGDRE 240
  241 SYQYLVESVR RFPPQERFAS MIADAGFEKV EYENLVGGVV AIHSAIKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.39794
Match: 1ve3A
Description: Crystal structure of PH0226 protein from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.25333584501255 bayes_pls_golite062009
transferase activity 1.07321114919891 bayes_pls_golite062009
oxidoreductase activity 0.964067575431689 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.612108481676679 bayes_pls_golite062009
methyltransferase activity 0.606225212585352 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.14147363365106 bayes_pls_golite062009
binding 0.109975487409217 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle