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View Structure Prediction Details

Protein: gi|222422945, gi...
Organism: Arabidopsis thaliana
Length: 561 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222422945, gi....

Description E-value Query
Range
Subject
Range
CG13625-PA - This gene is referred to in FlyBase by the symbol Dmel\CG13625 (CG13625, FBgn0039210). It is a prote...
gi|220945000, gi... - gi|220954826|gb|ACL89956.1| CG13625-PA [synthetic construct], gi|220945000|gb|ACL85043.1| CG13625-PA...
206.0 [0..33] [561..125]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN  60
   61 EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS GWVTLPLNRE DTQSNISPPR 120
  121 RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHNSPSPEPN RKHTKPVSLD SDMSPPRKRK ARNDSPSPEP EAKYLSEDLS PPRRRHVHSP  60
   61 SRESSRKRSD SVELDDDLSP PRRKRDLHGS PVSDVKKKSN DLSPPRRRRY HSPSPEPARR 120
  121 SSKSFGSNAD LSPPGRNINM KDSQDSDLSP QRKAADLRRS SENVSRSSNF DSSPPRRPRR 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [335-561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSPPQISKE QRKTGLISGK DIGSEYRKKK EDEKLRFKNM DSELTGQNAE AVFRDKITGK  60
   61 RISKEEYLKS KQKKVIEKPK EIKLEWGKGL AQKREAEARL QELELEKDKP FARTRDDPEL 120
  121 DQMMKERVRF GDPMAHLVKK RKYETTLVDL GDDEEMKKSG FIIPQSVPKH SWLTRRLEAA 180
  181 SNRYGIKPGR HWDGVDRSNG TEKDLIKKTN ERKATEIEAY LWSVADM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle