YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7486029, gi\|7...
Organism:	Arabidopsis thaliana
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7486029, gi|7....

Description	E-value	Query Range	Subject Range
gi\|186516803, gi... - gi\|30690601\|ref\|NP_849505.1\| unknown protein [Arabidopsis thaliana], gi\|186516803\|ref\|NP_001078500.2...	626.0	[0..1]	[516..123]
gi\|108705819, gi... - gi\|215713524\|dbj\|BAG94661.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|125584668\|gb\|...	513.0	[0..2]	[512..99]
gi\|114193936, gi... - gi\|115391015\|ref\|XP_001213012.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	508.0	[0..1]	[506..415]
gi\|159130607 - gi\|159130607\|gb\|EDP55720.1\| DUF726 domain protein [Aspergillus fumigatus A1163] gi\|70990554, gi\|... - gi\|70990554\|ref\|XP_750126.1\| DUF726 domain protein [Aspergillus fumigatus Af293], gi\|66847758\|gb\|EAL...	503.0	[0..1]	[506..363]
YFL034W - Putative integral membrane protein that interacts with Rpp0p, which is a component of the ribosomal ... gi\|14318485\|ref\|... - Putative integral membrane protein that interacts with Rpp0p, which is a component of the ribosomal ...	495.0	[0..1]	[505..359]
gi\|40740309, gi\|... - gi\|67527235\|ref\|XP_661632.1\| hypothetical protein AN4028.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	491.0	[0..1]	[506..393]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEQEMALAK AADAMVHSIQ CSVSIDAKKE KHQEYENECR EKYAVPEVKS KDVDLDKEKD  60
   61 KKEAAESAAR EGLEAGVVII DGSHKPEVLE NEKSVEEVTL LSHQRKINVL YELLSACLSD 120
  121 KHH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDKKCKRCRK GYDARHRVAL RLLATWFNIE WIKVEAIETM VACSAMAIQK SAEMKGEDNL  60
   61 TPTTSWAKWK RGGIIGAAAI TGGTLMAITG GLAAPAIAAG FGALAPTLGT IIPVIGAGGF 120
  121 AAAASAAGTV AGSVAVAASF GAAGAGLTGT KMARRIGDLD EFEFKAIGEN HNQGRLAVEV 180
  181 LVAGVVF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [311-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEEDFVKPWE GLTSNLERYT LQWESKNLIL VSTAIQDWLT SRLAMELMKQ GAMHTVLASL  60
   61 LMALAWPATI LVAADFIDSK WSIAIDRSDK AGRLLAEVLQ KGLQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [415-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNRYRFHDCC NEVNIISIFK SYMVAGRFIN VYATNDWTLG IAFRASLISQ GLAGIQPICI  60
   61 PGIENVDVTD MVEGHSSYLW KTQQILERLE IDTYYPVFRD TL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits